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Nature Research Cancer Community: Identification of actionable targets and potential immunotherapy strategies to treat gallbladder cancers

The advent of immunotherapy has revolutionized cancer treatment with significant survival benefits observed in various cancers including melanoma and lung cancer.
In order to determine potential opportunities for immunotherapy in GBC, we evaluated neoantigens arising from somatic mutations. We predicted high-affinity MHC class I binding neoantigen peptides for each tumor. This resulted in the identification of roughly 15 neoantigens per tumor.

Lung Cancer: Molecular Insights and Emerging Therapeutic Approaches

Lung cancer remains the leading cause of cancer-related deaths globally, accounting for 18.4% of all cancer fatalities. Smoking is the primary cause of lung cancer, responsible for 80-90% of lung cancer deaths, though other risk factors like secondhand smoke, radon, asbestos, and family history also play roles.

Immune repertoire diversity: Key to understanding disease processes and creating novel therapies

The adaptive immune system’s ability to recognize and neutralize a vast array of pathogens relies on the diversity of its lymphocyte repertoire. T and B lymphocytes, with their unique T cell receptors (TCRs) and B cell receptors (BCRs), are crucial for immunological memory and effective immune responses. This diversity allows the immune system to identify and combat a broad range of pathogens. Studying immune repertoire diversity offers valuable insights into disease mechanisms, therapeutic strategies, and vaccine development.

Comprehensive cancer profiling with Illumina’s TSO 500 assay

Illumina’s TSO 500 empowers comprehensive genomic profiling (CGP), unlocking crucial tumor biomarkers to drive precision medicine. By focusing on clinically relevant genomic regions, CGP provides in-depth analysis, accurately detects low-frequency mutations, and comprehensively characterizes tumors. This facilitates tailored treatment approaches, guiding therapy selection based on specific molecular profiles. Moreover, CGP enables non-invasive disease monitoring through circulating tumor DNA (ctDNA) analysis.

Single-Cell Sequencing: Applications, Methods, and Insights

Single-cell sequencing offers unprecedented resolution for analyzing the unique molecular signatures of individual cells. By deconstructing the cellular landscape, it reveals hidden cell populations, tracks how cells differentiate, and identifies disease biomarkers. By dissecting the genomic, transcriptomic, and epigenetic landscape of single cells, researchers can now gain a deeper understanding of complex biological processes, disease mechanisms, and how patients respond to treatments. This method is essential for both basic and clinical research for unlocking the mysteries of cellular complexity and dynamic biological processes.

Complementing strides made with short-reads with PacBio long-read sequencing

Short-read sequencing technologies have, without a doubt, revolutionized genomics. The ability to look at genetic variants at the base pair level and compare gene expression levels between normal and other conditions has made it possible to diagnose more diseases, develop more robust crops, and protect the biodiversity here on Earth.

Navigating Spatial Data Analysis for Publishable Research

Spatial analysis has become an indispensable tool in unraveling the complexities of biological systems. From understanding gene function to dissecting tissue microenvironments, spatial data holds the key to unlocking valuable insights into biological processes. However, harnessing the full potential of spatial data requires not only sophisticated analytical techniques but also considerable computational resources and expertise.

Melanoma & Skin Cancer Awareness Month: Genomics for developing effective therapies

Skin cancer is the most common type of cancer in the US. One in five Americans have the likelihood of developing skin cancer by the age of 70. Some common manifestations of skin cancer include basal cell carcinoma (BCC), squamous cell carcinoma (SCC) and melanoma. Research suggests over 5 million cases of skin cancer occur annually in the US alone. Non-melanoma skin cancers (basal cell carcinoma and squamous cell carcinoma) are the most common, followed by melanoma, the more aggressive form. Other types of skin cancer include Merkel cell cancer, cutaneous T-cell lymphoma, Kaposi sarcoma, skin adnexal tumors and sarcomas.

Unveiling the Complexity of Head and Neck Squamous Cell Carcinoma: From Genes to Microenvironment

Head and neck squamous cell carcinoma (HNSCC) ranks among the most prevalent cancers worldwide. In the United States, it is estimated that 58,450 new cases will be diagnosed in 2024, primarily affecting the oral cavity and pharynx1. Incidence rates among males are highest in non-Hispanic White and American Indian/Alaska Native individuals, with lower rates observed in Hispanic and Asian/Pacific Islander populations. Among females, incidence rates are elevated in non-Hispanic White and Asian/Pacific Islander individuals, while being lowest in Hispanic and Black populations.

From Sequences to Solutions: Exploring Colorectal Cancer Research & Treatment

Colorectal cancer (CRC) stands as the third most prevalent cancer and the second leading cause of cancer-related deaths in the US. It is projected that in 2024, there will be around 106,590 new cases of colon cancer and 46,220 new cases of rectal cancer. CRC incidence is notably higher among African Americans and lowest in Asian Americans/Pacific Islanders.

Empowering Prevention: Genomic Insights for National Cancer Prevention Month

National Cancer Prevention Month is observed in the month of February every year, with an objective to raise awareness and promote initiatives to prevent cancer. Cancer ranks as the second leading cause of death in the United States (US). Despite government-led cancer education initiatives, the battle against this disease remains complex, with variations in cancer risk persisting among different ethnic groups due to genetic predispositions and disparities in healthcare access.

From Single Cells to Spatial Landscapes: Unraveling Gene Expression with 10x Flex and Visium

Single-cell RNA sequencing (scRNA-seq) is a powerful method that is widely used in biomedical research. It is extensively used to determine cell composition of complex tissues, identify rare cell types, map heterogeneity at single cell level and identify paired, full-length immunoglobulin sequence and T-cell receptor α/β. Advancements in high-throughput single-cell RNA sequencing technologies, in combination with powerful computational tools, has made scRNA-seq a widely used technology

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