Single Cell Genomics

Single Cell Research

Single cell analysis has become a gold standard application in both basic as well as translational research. Several approaches are now available that capture the maximal transcript diversity in a given cell and allowing for multi-model analysis strategies to generate meaningful insights. MedGenome has adopted several commercially available platforms for single cell analysis.

Discover Your Application

Solutions for fresh or frozen cell suspensions, isolated cells in 96 well plates or methanol fixed cells

RNA, WTS, TranscriptomeGene Expression

  • Explore full length, 3' or 5' gene expression data for cellular heterogeneity, biomarker discovery and more
  • Combine gene expression with cell surface protein data for a multiomic look into rare cell populations or novel subsets

Antibody SolutionsImmune Profiling

  • Discover full length paired sequences for T and B cells repertoire analysis
  • Perform multiomic analysis with gene expression and immune repertoire data combined with cell surface protein data to look at functional states and subsets of immune cells

Epigenome, MethylationEpigenetic

  • Detect chromatin accessibility on a single cell level
  • Analyze chromatin accessibility plus gene expression simultaneously

Service Highlights

  • Support with experimental design and selection of appropriate single cell workflow
  • Process single cell samples for a wide range of sample types and input amounts
  • End-to-end solutions for sample QC, viability assessment, single cell library preparation, sequencing and analysis
  • Advanced analysis offering includes custom visuals and publication ready figures for improved data interpretation



BioFX Single Cell Analysis

  • Streamlined pipeline for fast & scalable analysis
  • Customized reporting
  • Interactive reports
  • Publication-ready figures
  • Improve data interpretation with support from MedGenome's team of experts


Explore Analysis Reports

BioFX's single cell analysis platform was built using state-of-the-art analysis tools for gene expression, T-cell and B-cell sequencing data. Accomplish multiomic analysis by interrogating gene expression and VDJ sequencing data simultaneously.

QC metrics

Differential Gene Expression
& Heatmap Visualization

Single Cell tSNE plots

Interactive tSNE plots with cell type & cluster information


Ordering and Data Delivery

MedGenome's customer portal allows for easy sample submission and sample tracking during lab processing. Data QC, raw data and interactive analysis reports are delivered securely through customer portal.


White Papers and Technical Resources

Comprehensive single-cell genomic applications for multi-omic analysis

Single cell genomics is a powerful approach to uncover cellular heterogeneity and understand molecular mechanisms of development and disease in normal and disease tissues. MedGenome has several options for single cell NGS processing. In this whitepaper, we highlight various workflows to help decide the best approach for your samples and scientific questions.


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