Resources

At MedGenome we provide the client with QC reports at every step of the workflow using standard recommendations from the manufacturer of kits and industry standards. Shown below is the type of data included in each step of the QC report.
Sample Type Sample QC Library QC Sequencing QC
DNA Qubit Qubit, TapeStation FastQC
RNA Qubit TapeStation (DV200, RIN) Qubit, TapeStation FastQC

Whole-genome Sequencing/Whole-exome Sequencing Sample QC Report

In this QC report, we show representative sample QC, sequencing QC and mapping metrics that will be provided to the customer for whole genome/exome from genomic DNA isolated from cells, fresh-frozen and FFPE tissue types.

  WGS QC Sample Report

Whole Transcriptome Sequencing Sample QC Report

In this QC report, we show representative library QC and sequencing QC and mapping metrics that will be provided to the customer for whole transcriptome profiling from total RNA isolated from cells, fresh-frozen and FFPE tissue types.

  RNA Sequencing QC Sample Report

TCR-Sequencing Sample QC Report

In this QC report, we show representative library QC and sequencing QC and mapping metrics that will be provided to the customer for SMARTer TCR Profiling and 10X V(D)J solutions.

  TCR Sequencing QC Sample Report

Tumor micro-environment analysis from human cancer

In this report, a thorough analysis and scoring is done for all the protein coding genes at multiple levels i.e. Tumor content, innate immune cells and adaptive immune cells and compared with TCGA Data.

Prioritization of T-cell neo-epitopes from human cancer samples

This report elucidates Neo-epitope prioritization analysis done on several levels that includes: HLA Binding Analysis, Proteasomal processing and TAP binding, TCR binding, Rank ordering of T-cell neo-epitopes and a detailed bioinformatics analysis.

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